- How to search for a chemical molecule by typing its name or by drawing its chemical structure (Chemistry module needed)
- How to search molecules with keywords only
- How to search for a sequence (Biosequence module needed)
- Tips to reduce noise when searching in Orbit Intelligence
Using Boolean and proximity operators are convenient to refine queries in case search results are too noisy or increase the recall when the number of results is too limited.
Each line are limited to 10 000 characters.
Several types of operators are available in the search form and in the command line:
- Boolean operators
- Proximity operators
- Numeric operators
Truncations are symbols that replace one or more characters, which lets you search for different variations of a term. The shortened term must have at least three characters for truncation to properly function.
You can use up to 9 truncations in a same word, or only 7 if you combine 2 different truncations (? and # for example). The operator _ described below is not a truncation.
Truncation replaces any number of characters
Truncation replaces zero or one character
Truncation replaces exactly one character
Always be careful with truncations when the term is short. For example, if I want to catch the plural for the word car, I might be tempted to write car? but such a query will bring noise by retrieving documents containing "care", "card", "cart" on top of the desired "cars".
Finds records containing at least one of the words (in the case of a FAMPAT record, at least one of the members will have one or more of your terms)
sulfur OR sulphur
Finds records containing all the words
plutonium AND isotope
Finds records containing the first term without the second term
suv NOT vesicle
The terms in the same field
sodium F chlorine
The terms in the same sentence
sodium S chlorine
The terms in the same paragraph
sodium P chlorine
The terms adjacent in any order inside the same sentence
redundancy D check
The terms adjacent, regardless of the order, separated by a maximum of n words inside the same sentence (n value between 1 and 99)
conduct 2D electric 2D adhesive
The terms adjacent in the order specified inside the same sentence; treatment applied by default for two terms entered without operator
smart W card?
The terms adjacent in the order specified and separated by a maximum of n words inside the same sentence (n = value between 1 and 99)
friction 9W pad?
The underscore allows for simultaneous searching of terms that may be written as one or two words. It will also retrieve results where there is a hyphen between terms, and it can also be used in chemical formulas. Up to five _s may be used within a term
Parentheses (nesting) are necessary when combining different operators
((wireless W application W protocol) OR wap) NOT (dna OR transgenic)
Note that for the Workfiles module, only Boolean operators (AND, OR, NOT) are available and usable.
NB: special characters (/ & % - . , ; : etc.) are not searchable and are considered as spaces.
For example, if you are looking for 12.5%, the best query would be "12" W "5".
The video shows a quick example of using Boolean, proximity searching and truncators. Notice the blue font that the software uses to acknowledge the use of truncators/operators and the parenthesis are yellow, showing where they open and close.