Reading Alignments

  • On the right panel, a new tab has been created to show the alignments, the Alignment tab (1). 
  • The alignments are organized by query sequence (2). 
  • For each query sequence, a graphical representation of each unique sequence match is shown (3).  
  • All matches for a query can be shown/hidden by clicking on the small triangle next to the query name (4).  
  • It is headed by the list of identical sequence identifiers within the current family and their claimed status (disclosed or claimed) (5).  
  • The graphic representation is designed to give you a very quick idea about the match. It shows all the match’s main scores, alignment coordinates as well as frames or strands.


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